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Defining BioInformatics
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This contains information about universities that are offering bioinformatics degree programs.
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Home » 2011 » August » 11 » Specialized Databases
2:32 PM Specialized Databases |
Specialized Databases are:
- Specialized sequence databases
- dbEST (Database of Expressed Sequence Tags at NCBI, USA)
- TGI (TIGR Genome Indices, integrated analysis of public EST data, TIGR, USA)
- Mendel ESTs (Database of annotated plant ESTs in dbEST at JIC, Norwich, UK)
- Bodymap (Human and mouse genome expression database (ESTs) at University of Tokyo, JP)
- dbGSS (Database of Genome Survey Sequences at NCBI, USA)
- dbSNP (Database of Single Nucleotide Polymorphisms at NCBI, USA)
- SNPper (SNP explorer by Children's Hospital Informatics Program, Boston, USA)
- dbSTS (Database of Sequence Tagged Sites at NCBI, USA)
- HGVBASE (Human Genome Variation database, European consortium involving the Karolinska Institute (Sweden), EBI (UK) and EMBL (Germany)
- RNA databases
- ssu and lsu rRNA database (European ribosomal database at University of Ghent, Belgium)
- RDP (Ribosomal database Project, Michigan State University, USA)
- miRNA Registry (microRNA registry at the Sanger Insitute, UK)
- Genome databases
- Collections
- GOLD (Genomes On Line Database: list of all complete and ongoing genome projects worldwide at University of Illinois, USA)
- Genomes at NCBI (NCBI, USA)
- Organism Specific Databases (at CMS Molecular Biology Resource, SDSC, USA)
- TIGR Database (TDB) (The Institute for Genomic Research, Rockeville MD, USA)
- Microbial Genomes (Completed microbial genomes in GenBank and links to genomes in progress)
- PEDANT (Browse computationally analyzed completed and unfinished genomes at MIPS, Munich, Germany)
- Ensembl (Automatically annotated genomes at EBI, UK)
- GeneQuiz (Highly automated analysis of completed genomes at EBI, UK)
- HAMAP (Highly automated microbial annotation of proteins at ExPaSy, CH)
- UK CropNet (UK Crop Plant Bioinformatics Network, at JIC, IGER, NASC and SCRI, UK)
- ArkDb (Livestock animal genome and mapping database at Roslin Institute, Edinburg, UK)
- MITOP (MITOchondria Project, database mitochondria-related genes, proteins and diseases at MIPS, Munich, Germany)
- Codon Usage Database (Organism specific codon usage database at Kazuasa DNA Research Institute, Jp)
- GeneCensus (Comparative genomics database at Yale University, USA)
- Model organism databases
- Escherichia coli
- S. cerevisiae (Baker's yeast)
- SGD
- (Yeast genome database at Stanford, USA)
- CYGD
(MIPS Comprehensive Yeast Genome Database, Neuherberg, Germany)
- Arabidopsis thaliana
- Oryza sativa (Rice)
- RGP (Rice Genome Research Programme, Jp)
- Gramene (Comparative mapping resource for graines)
- INE (Integrated rice genome explorer: common database of the International Rice Genome Sequencing Project, IRGSP, Jp)
- Caenorhabditis elegans
- WormBase (C. elegans database at Cold Spring Harbor Laboratories, USA)
- Drosophila melanogaster (Fruit fly)
- FlyBase (Drosophila genome database)
- BDGP (Berkeley Drosphila genome project)
- Danio rerio (Zebrafish)
- Mus musculus (Mouse)
- MGI (Mouse genome informatics)
- Homo sapiens
- GDB
(The human Genome Database, Toronto, Canada)- HIB
- (HumanInfoBase of annotated UniGene clusters - putative human gene transcripts - at MIPS, Germany)
- Human genome resources
- (at NCBI, USA)
- Human genome browser
- (at the University of California Santa Cruz, USA)
- HGP
- (Human Genome Project at the Sanger Institute, Cambridge, UK)
- GeneLinks (Portal to hyperlinks for each human gene at the Center for Genomics and Bioinformatics, Karolinska Institutet, Stockholm, Sweden)
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