Generalized DNA, protein and carbohydrate databases - 11 August 2011 - BioInformatics Pakistan
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Generalized DNA, protein and carbohydrate databases




Generalized DNA, protein and carbohydrate databases
      
  1. Primary sequence databases
    • EMBL (European Molecular Biology Laboratory nucleotide sequence database at EBI, Hinxton, UK)
    • GenBank (at National Center for Biotechnology information, NCBI, Bethesda, MD, USA)
    • DDBJ (DNA Data Bank Japan at CIB , Mishima, Japan)
  2. Protein sequence databases
    • SWISS-PROT (Swiss Institute of Bioinformatics, SIB, Geneva, CH)
    • TrEMBL (=Translated EMBL: computer annotated protein sequence database at EBI, UK)
    • PIR-PSD (PIR-International Protein Sequence Database, annotated protein database by PIR, MIPS and JIPID at NBRF, Georgetown University, USA)
    • UniProt (Joined data from Swiss-Prot, TrEMBL and PIR)
    • UniRef (UniProt NREF (Non-redundant REFerence) database at EBI, UK)
    • IPI (International Protein Index; human, rat and mouse proteome database at EBI, UK)
  3. Carbohydrate databases
    • CarbBank (Former complex carbohydrate structure database, CCSD, discontinued!)
  4. 3D structure databases
    • PDB (Protein Data Bank cured by RCSB, USA)
    • EBI-MSD (Macromolecular Structure Database at EBI, UK )
    • NDB (Nucleic Acid structure Datatabase at Rutgers State University of New Jersey , USA)


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